CRISPR: Fixed failure to install Doench 2016 algorithm.Annotations: Fixed a bug where running a cloning operation would reset custom annotation colors.User Interface: Fixed right click menu on Mac showing too far on the right.Search: Fixed vertical scrollbar visibility.Primers: Fixed bug where a Probe or Primer was not paired with Primers that have an extension added.Folder indexing now needs to be complete before allowing metadata import.Fixed error where tutorials with subfolders could not be imported.Command Line Interface: Fixed bug where documents in the local database could not be found.Cloning: Reduced the number of dialogs associated with poor quality primer generation warnings when batch cloning.Annotation Table: Added columns for paired primers and associated probes.Fixed UI error where some annotations were not visible in Text View.Fixed bug where text in the document table could show as multi-line text when the table was resized.Fixed bug where drag and drop was not showing the correct colors in light mode.Cloning reports are no longer light themed when viewing in dark mode.SPAdes: Use python3 by default on MacOS.Save as PDF: Fixed bug on macOS where saving as PDF would send to the local printer.Fixed a rare case where all annotations may disappear from the sequence view.Fixed a crash when importing multiple files from the wrapper plugin.Added Logs class to allow developers easy access to standard Geneious logs.Plugins: Fixed issue where disabling a plugin that another plugin was dependent on caused a failure to start.Optimize Codons: Fixed a rare crash when running optimize codons on a sequence list.Fixed references to input reads being discarded sometimes when mapping to a circular reference sequence.Fixed a rare case where Map to Reference introduces a gap 1 bp from the end of the sequence.Licensing: Fixed rare error whilst checking Sassafras license.Sequences that have metadata in comments can now be grouped during import.Geneious now sorts sequence annotations by sequence start index when exporting in GFF and BED file formats.Fixed rare crash when importing vcf files with malformed meta-info data.Fixed a bug where document and folder chooser dialogs do not appear when Grammarly Desktop is installed or system screen zoom settings are enabled.High/Low Coverage Finder: Changed annotation type to be always "Coverage - Low" instead of sometimes "Coverage - Low" and sometimes "Low" and likewise for high coverage annotations.Fixed a rare crash when gathering crash information.Fixed occasionally being unable to uninstall Geneious.Fixed a bug where ctrl+drag (or alt+drag) documents into the same folder and choosing 'Replace' deletes these documents.Added ability for admins to disable arbitrary plugins.Added a button to hide/show text on all password fields.Geneious Server: Now ensures python3 is available for SPAdes.Improve performance when copying multiple documents and folders in the local database.Prevented attempts to install an incompatible version of python.Fixed annotation colors not showing up sometimes when Find CRISPR Sites is run on sequence lists.Better detection of pre-installed python3.Added parameter -installationId to display installation id in command line.Sequence Lists produce correct lineage interval in Golden Gate cloning.Sequence Lists are now reversed correctly in Golden Gate cloning.Operations should now perform significantly faster on large datasets.Fixed rare crash where rearranging cloning inserts in restriction cloning.Fixed a bug where cloning results had the wrong insert order in their names.Chromatogram Viewer: Fixed a bug where some Color Schemes were showing incorrect line and text colors.Fixed bug where changing options in BLAST workflows for one blast type affected other blast type options.Apply Variants to Reference Sequence: Added option to mask low coverage regions with N.Advanced Preferences: Fixed advanced preference table values not being reloaded after changes.Added floating name column to document and annotation tables.Added filter functionality to combo box components with 10 or more values.Improved the naming scheme for sequence list results of cloning operations.Improved input validation for batch operations.3D Protein viewer: Updated Jmol to version 6.Minor Features and Usability Improvements: Primer Import: Added the ability to automatically annotate primer extensions on import if provided appropriately formatted sequences.Parts Cloning: Added support for protein documents.CLI: Added support to import and export files from shared databases.CLI: Added support to import and export files from local databases.
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